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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141402365_141402889_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141402365 - 141402889
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTACAC
5'SS Class:
major
3'SS Sequence:
TCCTTCCCTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CTCATTCTAACT
Flanking Amino Acid:
ESIFLCENPQCIYPLGYKPF
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.1
60.6
38.2
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.5
0.66
0.7
77.7
24.3
Minor 5ss
38.4
-1.3
3
50.8
45.7
Minor BPS
50.7
0.1
1.7
68.3
43

Associated Gene:

Gene:
USPL1
Ensembl Gene ID:
ENSAPLG00000003991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004085
141401500 - 141411533
10034