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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141403545_141405579_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141403545 - 141405579
Intron Length:
2035

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
TTTTTTTCCATA
Flanking Amino Acid:
LNTCKRSKLKDVLPKAELHL
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
66.1
0.4
1
73
31.5
Major PPT
87.2
0.84
0.6
84.5
23.5
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
50.5
0.01
1.9
70.41
36.7

Associated Gene:

Gene:
USPL1
Ensembl Gene ID:
ENSAPLG00000003991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004085
141401500 - 141411533
10034