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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141405667_141406078_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141405667 - 141406078
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTTTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
CTGTCTTTCAAG
Flanking Amino Acid:
QLQPLLKCGLGEEESPLFAL
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
81.8
38.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.8
0.45
1.1
67.1
38.4
Minor 5ss
37
-1.5
2.8
43.2
43.8
Minor BPS
48.8
-0.2
2
55.75
45.9

Associated Gene:

Gene:
USPL1
Ensembl Gene ID:
ENSAPLG00000003991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048164
141404584 - 141411533
6950
ENSAPLT00000004085
141401500 - 141411533
10034