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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141408013_141409650_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141408013 - 141409650
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGAGCCTTTACA
Flanking Amino Acid:
HFITWALNPDGTWLECDDLK
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.8
0.85
0.8
85.3
34.2
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
60.7
0.33
1.8
69.09
42.7

Associated Gene:

Gene:
USPL1
Ensembl Gene ID:
ENSAPLG00000003991
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048164
141404584 - 141411533
6950
ENSAPLT00000004085
141401500 - 141411533
10034