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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141417646_141421307_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141417646 - 141421307
Intron Length:
3662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TTTTTCTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTAACA
Flanking Amino Acid:
IVTLISVVQNAFFASKVEHE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.2
44.5
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
87.9
0.85
0.8
85.2
28
Minor 5ss
32.3
-2
3
39.3
46
Minor BPS
91.6
1.3
0.7
95.02
20.5

Associated Gene:

Gene:
ALOX5AP
Ensembl Gene ID:
ENSAPLG00000004149
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004259
141417576 - 141423852
6277