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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141421408_141422487_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141421408 - 141422487
Intron Length:
1080

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
AATTCCTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTGTTCTGATTT
Flanking Amino Acid:
SSAFDRVYTANQNCGHAYPT
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
75
35.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
71.2
0.48
0.9
62.9
38.6
Minor 5ss
32.3
-2
2.7
37.1
33.8
Minor BPS
51.3
0.12
1.7
69
42.3

Associated Gene:

Gene:
ALOX5AP
Ensembl Gene ID:
ENSAPLG00000004149
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004259
141417576 - 141423852
6277