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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141422559_141422985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141422559 - 141422985
Intron Length:
427

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
GTGCTTTATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
TGTGCTTTATGC
Flanking Amino Acid:
LWCAGLLCSQAPAAFAGLMY
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
74.8
0.56
1
69.6
40.7
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
48.9
-0.1
2
62.32
43.6

Associated Gene:

Gene:
ALOX5AP
Ensembl Gene ID:
ENSAPLG00000004149
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004259
141417576 - 141423852
6277