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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141423068_141423689_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141423068 - 141423689
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTG
5'SS Class:
strong_major
3'SS Sequence:
CCCGTCTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATAAC
U12 Branch Point Sequence:
TGATAACCAGTT
Flanking Amino Acid:
FVGYLGERTQSTPGYLFGKR
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.5
40.6
Major BPS
62.7
0.32
1.2
64
39.8
Major PPT
69.8
0.45
0.8
60.7
35.3
Minor 5ss
35.6
-1.6
3.2
47.4
48
Minor BPS
35.9
-0.9
2.1
53.68
40.8

Associated Gene:

Gene:
ALOX5AP
Ensembl Gene ID:
ENSAPLG00000004149
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004259
141417576 - 141423852
6277