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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141489921_141491042_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141489921 - 141491042
Intron Length:
1122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTACCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTGACATTAACT
Flanking Amino Acid:
ATIAGEFRNKDEKYIHIDEM
Intron Amino Acid Position:
737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
72.3
37.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80
0.67
0.9
73.3
36.9
Minor 5ss
39.1
-1.2
3.1
52.5
44.7
Minor BPS
71.2
0.74
1.6
86.33
39.2

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259