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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141491163_141491263_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141491163 - 141491263
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
AAATATGTAATG
Flanking Amino Acid:
VYVDKLEDLKKLGTPIEMRY
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
83.4
0.75
0.8
77.1
37.1
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
44.5
-0.5
2.1
48.62
39.1

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259