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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141492584_141493335_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141492584 - 141493335
Intron Length:
752

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCAACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTCTCTCCAACT
Flanking Amino Acid:
EENKTPDVKKTNEKKGDQPP
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
74.7
28.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
68.9
0.42
0.9
66.4
33.2
Minor 5ss
29.2
-2.4
3.1
34.7
35.4
Minor BPS
58.7
0.35
1.9
80.84
41

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259