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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141493468_141494248_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141493468 - 141494248
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGGGCTTTCATT
Flanking Amino Acid:
DQRPAENSNDKNIQQENSEA
Intron Amino Acid Position:
529

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
78.4
25.8
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
81.2
0.7
0.9
77.9
35.2
Minor 5ss
36.5
-1.5
2.9
44.6
43.6
Minor BPS
50.1
0.08
1.9
67.66
44.1

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259