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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141498220_141499145_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141498220 - 141499145
Intron Length:
926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTAC
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGTAATGTAATG
Flanking Amino Acid:
EAIARGCALQCAILSPAFKV
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
71.8
34.3
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.4
0.8
0.6
84.6
23.3
Minor 5ss
43.1
-0.8
3.1
57.8
47.2
Minor BPS
44.8
-0.5
2.2
53.54
41.7

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259