Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141500445_141500875_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141500445 - 141500875

Intron Length:

431

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTAAGA

5'SS Class:

major

3'SS Sequence:

TCTTTCAAACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAA

U12 Branch Point Sequence:

TTAGACTAAATT

Flanking Amino Acid:

ACAFNKSKLKVLGTAFDPFL

Intron Amino Acid Position:

222

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

64.5

41.5

Major BPS

78.4

0.71

0.9

81.3

29.8

Major PPT

70.6

0.46

64.4

40.5

Minor 5ss

31.5

-2.1

3.1

40.7

Minor BPS

52.3

0.15

1.9

73.52

43.5

Associated Gene:

Gene:

HSPH1

Ensembl Gene ID:

ENSAPLG00000005104

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005327

141488585 - 141510843

22259