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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141507315_141510429_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141507315 - 141510429
Intron Length:
3115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GATTTCTGAATG
Flanking Amino Acid:
RAIGVSAKNQQITHAHNTVS
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87
0.83
0.7
81.4
30.6
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
60.5
0.19
1.5
62.09
39.7

Associated Gene:

Gene:
HSPH1
Ensembl Gene ID:
ENSAPLG00000005104
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005327
141488585 - 141510843
22259