Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141510488_141510736_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141510488 - 141510736

Intron Length:

249

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCC|GTGAGTACG

5'SS Class:

major

3'SS Sequence:

TTGTTCTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTTAAG

U12 Branch Point Sequence:

GCCGAGTTAAGC

Flanking Amino Acid:

VANEFSDRCTPSVVSFGSKN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.3

0.36

1.3

62.7

43.4

Major BPS

51.6

0.04

1.6

61.4

43.2

Major PPT

89.2

0.88

0.7

84.7

30.1

Minor 5ss

32.5

-2

2.6

39.5

38.8

Minor BPS

38.8

-0.8

2.3

43.03

44.4

Associated Gene:

Gene:

HSPH1

Ensembl Gene ID:

ENSAPLG00000005104

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005327

141488585 - 141510843

22259