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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141535704_141537043_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141535704 - 141537043
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TGCATCCTAATT
Flanking Amino Acid:
EDTAELPVLQKSEKSGTVSK
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
86
0.81
0.7
77.5
31.2
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
53
0.17
1.7
69.72
41.4

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260
ENSAPLT00000006268
141527647 - 141586527
58881