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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141572370_141573167_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141572370 - 141573167
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
TCTGTCCAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
AATTACAAAATT
Flanking Amino Acid:
TTFSNFLPLCKDPVKKEDVF
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68.3
42.6
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
63.6
0.31
1
59.5
36
Minor 5ss
38.8
-1.3
3
52.6
43.7
Minor BPS
47.7
-0.1
2
69.81
40.8

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260
ENSAPLT00000006268
141527647 - 141586527
58881