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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141573238_141577580_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141573238 - 141577580
Intron Length:
4343

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
AACTGTTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATGTCAACAACT
Flanking Amino Acid:
KTCRKFHGDRIPVVKQTWER
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
76.2
0.59
0.9
69.3
40.8
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
48.8
-0
2.1
73.46
42.6

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260