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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141573238_141579591_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141573238 - 141579591
Intron Length:
6354

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTGTTACT
Flanking Amino Acid:
KTCRKFHGDRSHCGKTFAIL
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.1
0.65
0.7
77.2
24.8
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
60.2
0.4
2.3
87.77
37.8

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006268
141527647 - 141586527
58881