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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141577695_141579591_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141577695 - 141579591
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTCCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TTTTCTGTTACT
Flanking Amino Acid:
IDLGVPNTERGHCGKTFAIL
Intron Amino Acid Position:
337

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
79.1
0.65
0.7
77.2
24.8
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
60.2
0.4
2.3
87.77
37.8

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260