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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141580864_141583136_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141580864 - 141583136
Intron Length:
2273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTTAACTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
GGYSYITGGGGMVFSRTAVQ
Intron Amino Acid Position:
372

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
68.5
38.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
82.6
0.73
0.9
82.5
32.9
Minor 5ss
38
-1.4
3.3
47.2
48.3
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260
ENSAPLT00000006268
141527647 - 141586527
58881