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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141586447_141595408_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141586447 - 141595408
Intron Length:
8962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
AATGATTTATCC
Flanking Amino Acid:
HKHWNIDPVKVCPMPLLAKT
Intron Amino Acid Position:
488

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
100
1.12
0.4
100
0
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
48
-0.1
1.8
58.72
40.2

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260