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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141595535_141596531_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141595535 - 141596531
Intron Length:
997

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTGGA
5'SS Class:
major
3'SS Sequence:
TCCTCCTACCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAATAT
U12 Branch Point Sequence:
TTCCTCCTACCT
Flanking Amino Acid:
DQSKERNVIIACFFGIMNPS
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
63.2
36.9
Major BPS
50.9
0.02
1.1
47.4
35.7
Major PPT
68.5
0.42
0.8
61.8
33.8
Minor 5ss
29.2
-2.4
3.2
36.9
41.8
Minor BPS
49.7
0.06
2
73.51
43.3

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260