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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141596663_141596776_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141596663 - 141596776
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
CATACCAGAATA
Flanking Amino Acid:
AVSFRPRLSERGDTRAIS*
Intron Amino Acid Position:
573

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.5
0.8
0.7
80.7
24.6
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
48.3
-0.1
1.8
59.55
39.9

Associated Gene:

Gene:
B3GLCT
Ensembl Gene ID:
ENSAPLG00000006024
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047743
141527647 - 141596906
69260