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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141670591_141671578_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141670591 - 141671578
Intron Length:
988

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTGGA
5'SS Class:
major
3'SS Sequence:
TGATTACTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TGTGTTTAAACA
Flanking Amino Acid:
VPLVSSNVTVLSLAHNQIHS
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.56
1.1
65.7
40.2
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
74.1
0.54
0.9
71.2
39.6
Minor 5ss
35
-1.7
3.3
50
46.3
Minor BPS
54.5
0.14
1.8
66.82
40.3

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658