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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141671651_141673139_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141671651 - 141673139
Intron Length:
1489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GTTTTCTTACCT
Flanking Amino Acid:
VFSKYTKVKKIFLQNNCIQT
Intron Amino Acid Position:
164

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
87.3
27
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
77
0.61
0.9
70.9
39.7
Minor 5ss
42.7
-0.8
2.8
59.4
38.1
Minor BPS
73.6
0.82
1.6
88.23
36.9

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658