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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141676015_141676706_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141676015 - 141676706
Intron Length:
692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TATTGTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
GTTTCCTTATTG
Flanking Amino Acid:
ICSQMPLINWMDFEGNRIKT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.9
0.58
0.9
74.6
40.1
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
68.8
0.45
1.7
72.14
41

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658