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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141676779_141679194_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141676779 - 141679194
Intron Length:
2416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CTGTTTCTTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTTTCTTGAAG
Flanking Amino Acid:
TFLECDALTVLDLSSNRITE
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
74.1
0.54
1
75.3
33.5
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
64.4
0.31
1.5
68.12
39.3

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658