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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141679267_141683479_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141679267 - 141683479
Intron Length:
4213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
ACATATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATTTACATATTT
Flanking Amino Acid:
IFKDLKYLQKLDLEMIEIPN
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
77.3
33.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
76
0.58
0.9
68.8
41
Minor 5ss
44.8
-0.6
2.9
68.1
42.7
Minor BPS
50.4
0.09
2
76.61
39.8

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658