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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141685280_141686717_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141685280 - 141686717
Intron Length:
1438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
GTTTCTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TGTTTCTTAAAT
Flanking Amino Acid:
THAMSIKILCCADCLMGVYL
Intron Amino Acid Position:
385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
76.5
38.6
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
69.7
0.44
1
66.9
38.4
Minor 5ss
41.9
-0.9
2.8
57.5
41
Minor BPS
78.9
0.99
1.2
89.96
33.4

Associated Gene:

Gene:
RXFP2
Ensembl Gene ID:
ENSAPLG00000006226
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006462
141666560 - 141693217
26658