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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141756478_141814585_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141756478 - 141814585
Intron Length:
58108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTACCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAA
U12 Branch Point Sequence:
TCTCTTCTACCT
Flanking Amino Acid:
RPKKRPSIFSASPVGNGYIK
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
72
0.55
1.1
63.4
44.3
Major PPT
84.3
0.77
0.8
81.3
30.4
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
47.8
-0
1.9
69.07
42.2

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035992
141756273 - 141947171
190899