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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141814786_141829735_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141814786 - 141829735
Intron Length:
14950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ATATGTTTAATA
Flanking Amino Acid:
KIRIIMAEPLEKPLTKSLQR
Intron Amino Acid Position:
91

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
83.5
0.75
0.8
82.4
34
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
61.9
0.37
1.7
70.19
36.4

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006897
141786354 - 141947171
160818
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899