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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141840540_141840669_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141840540 - 141840669
Intron Length:
130

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCTC
5'SS Class:
major
3'SS Sequence:
TATCTCTTGGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTCTTATCT
Flanking Amino Acid:
LAFKHFKYKEGYLGPNTGNM
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.8
43.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
72.3
0.5
1
69.9
36.2
Minor 5ss
34.9
-1.7
3.4
42.7
44.4
Minor BPS
73.5
0.82
1.5
87.15
38.9

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818