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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141848852_141849989_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141848852 - 141849989
Intron Length:
1138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TGTGCTTGAACT
Flanking Amino Acid:
FLNNCLSNLKNKDPKMARVA
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
1
86.4
29.1
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
84.5
0.78
0.8
78
36.2
Minor 5ss
36.7
-1.5
2.7
46.1
42.1
Minor BPS
66.4
0.59
1.6
81.55
40

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006897
141786354 - 141947171
160818
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899