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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141859917_141863422_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141859917 - 141863422
Intron Length:
3506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACCT
Flanking Amino Acid:
SKLELIDLLARLSIHMDDEL
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.3
0.82
0.8
80.6
31.4
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
66.2
0.59
1.9
88.65
36.2

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818