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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141865945_141867595_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141865945 - 141867595
Intron Length:
1651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCTCCACA
Flanking Amino Acid:
SFIHVAVSDSTTIPLTHSVD
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
53.5
0.1
2
72.76
39.1

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818