Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141876128_141877456_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141876128 - 141877456

Intron Length:

1329

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CGT|GTAAGTACT

5'SS Class:

major

3'SS Sequence:

TTTATATTCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTCATTTATA

Flanking Amino Acid:

DNILACQDLRVHQLGCEVVV

Intron Amino Acid Position:

1175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.4

0.62

1.1

77.4

37.4

Major BPS

100

1.24

0.5

100

Major PPT

83.4

0.75

0.8

81.5

Minor 5ss

40.4

-1.1

2.8

53.8

42.8

Minor BPS

64.8

0.46

1.9

80.63

34.6

Associated Gene:

Gene:

FRY

Ensembl Gene ID:

ENSAPLG00000006519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035992

141756273 - 141947171

190899

ENSAPLT00000006897

141786354 - 141947171

160818

ENSAPLT00000037869

141786354 - 141947171

160818