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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141877612_141880958_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141877612 - 141880958
Intron Length:
3347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATT
5'SS Class:
major
3'SS Sequence:
TTTATTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTCTGTTTATTC
Flanking Amino Acid:
FKAIATVCGSRNYPFDIVTL
Intron Amino Acid Position:
1226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
79.1
34.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
84.9
0.79
0.7
78
36.4
Minor 5ss
45.6
-0.5
2.9
66.8
44.1
Minor BPS
50.4
-0
2
65.17
41.7

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006897
141786354 - 141947171
160818
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899