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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141881585_141883355_F

Intron Information:

Intron Rank:
30
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
141881585 - 141883355
Intron Length:
1771

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTA
5'SS Class:
major
3'SS Sequence:
TACTATCTTAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CCTTTTTTAACT
Flanking Amino Acid:
YPELTLPLFSGKPAISDNTS
Intron Amino Acid Position:
1317

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
74.5
35.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
57.5
0.17
1.7
65
40.7
Minor 5ss
35.3
-1.7
3.5
49.6
46.6
Minor BPS
75.7
0.88
1.2
82.56
39.6

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818