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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141883611_141884567_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141883611 - 141884567
Intron Length:
957

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGATCCTTTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGATCCTTTACA
Flanking Amino Acid:
LNNLMYMTAKYGDEIPGPEM
Intron Amino Acid Position:
1403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
79.4
0.66
0.9
72.7
37.4
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
71.6
0.67
1.6
77.42
38.7

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818