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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141895652_141898681_F

Intron Information:

Intron Rank:
37
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
141895652 - 141898681
Intron Length:
3030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
CCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCATAT
U12 Branch Point Sequence:
ATTGCTGTAACC
Flanking Amino Acid:
LPLLLHALFLGLDHYRPEVF
Intron Amino Acid Position:
1651

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
65.3
40.7
Major BPS
74.2
0.6
1
69.3
38.4
Major PPT
85.6
0.8
0.6
84.6
23.2
Minor 5ss
31.8
-2.1
3
32.6
41.5
Minor BPS
56.7
0.19
2.1
72.1
39.6

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818