Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141903767_141905309_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

141903767 - 141905309

Intron Length:

1543

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAAGAGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTTTGGGTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGCAAT

U12 Branch Point Sequence:

TATGCTCTATGT

Flanking Amino Acid:

KNSDLLTVLSRSSSPDLTSS

Intron Amino Acid Position:

1914

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.9

0.73

67.3

36.7

Major BPS

61.8

0.29

1.4

70.7

42.6

Major PPT

72.2

0.5

1.1

69.2

46.1

Minor 5ss

32.2

-2

3.4

43.3

Minor BPS

44.1

-0.3

2.2

65.28

45.4

Associated Gene:

Gene:

FRY

Ensembl Gene ID:

ENSAPLG00000006519

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037869

141786354 - 141947171

160818

ENSAPLT00000035992

141756273 - 141947171

190899

ENSAPLT00000006897

141786354 - 141947171

160818