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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141913555_141914348_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141913555 - 141914348
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
AAAATGCTAACT
Flanking Amino Acid:
VSWKRPQYSQKRTKEKLVHV
Intron Amino Acid Position:
2366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
74.7
36.3
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
45.8
-0.4
3
65.7
45.4
Minor BPS
43.9
-0.3
2.2
61.94
41.3

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818