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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141925991_141927203_F

Intron Information:

Intron Rank:
53
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141925991 - 141927203
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTGTA
5'SS Class:
major
3'SS Sequence:
TTTTCTCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTTCCTTTCATC
Flanking Amino Acid:
VDRLEQFALTSFGDVDRNAS
Intron Amino Acid Position:
2623

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
74.5
35.9
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
91.1
0.92
0.6
89.5
19.1
Minor 5ss
35.3
-1.7
3.5
49.6
46.6
Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818