About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141933786_141934651_F


Intron Information:

Intron Rank:
55

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
141933786 - 141934651

Intron Length:
866

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACA|GTGAGTATA

5'SS Class:
major

3'SS Sequence:
TTCATTTTTCCAG|C

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
TTTTTAT

U12 Branch Point Sequence:
TTTTATTTCATT

Flanking Amino Acid:
CPTLFVDAETLLSCGLLEKL

Intron Amino Acid Position:
2737

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
75.2
0.6
1
77.2
32.8

Major BPS
96.5
1.15
0.6
86
34.2

Major PPT
87.6
0.85
0.8
80.3
37.1

Minor 5ss
36.1
-1.6
2.9
47.9
41.8

Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
FRY

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

141786354 - 141947171
160818

141756273 - 141947171
190899

141786354 - 141947171
160818