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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141935248_141943939_F

Intron Information:

Intron Rank:
57
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141935248 - 141943939
Intron Length:
8692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAGC
5'SS Class:
major
3'SS Sequence:
AATCTCTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TCTTTATTAATT
Flanking Amino Acid:
TCQPGDSEEKQLELCQRLYK
Intron Amino Acid Position:
2798

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
69.7
40.9
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
69.6
0.44
0.8
67
34.4
Minor 5ss
32.7
-2
3.1
43.6
43.7
Minor BPS
70.6
0.73
1.5
84.39
36.6

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899
ENSAPLT00000006897
141786354 - 141947171
160818