About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141946324_141946912_F

Intron Information:

Intron Rank:
59
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
141946324 - 141946912
Intron Length:
589

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
TAATGATGCACC
Flanking Amino Acid:
VKAVRQIRECRILWPNDIFG
Intron Amino Acid Position:
2899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.6
1.15
0.7
90.9
28.7
Major BPS
76.8
0.67
1
66
40.9
Major PPT
79.2
0.66
1
72.9
42.2
Minor 5ss
35.8
-1.6
4.1
57.8
46.8
Minor BPS
40.6
-0.7
2.4
54.81
42.5

Associated Gene:

Gene:
FRY
Ensembl Gene ID:
ENSAPLG00000006519
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006897
141786354 - 141947171
160818
ENSAPLT00000037869
141786354 - 141947171
160818
ENSAPLT00000035992
141756273 - 141947171
190899