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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141951453_141951601_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
141951453 - 141951601
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGAT
5'SS Class:
strong_major
3'SS Sequence:
AACTTGTTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAGTAAC
U12 Branch Point Sequence:
AGTAACTGAAAA
Flanking Amino Acid:
YVWCISGSNKVYFKQFCRKC
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
28.2
Major BPS
66.7
0.42
1.2
67.6
36.5
Major PPT
68.5
0.42
0.9
65.8
40
Minor 5ss
34.4
-1.8
3.3
49.3
46.9
Minor BPS
48
-0.1
1.7
59.57
38.8

Associated Gene:

Gene:
ZAR1L
Ensembl Gene ID:
ENSAPLG00000007718
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008001
141950802 - 141952451
1650