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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_141959012_141959802_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
141959012 - 141959802
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCCTGA
5'SS Class:
weak_major
3'SS Sequence:
TTGTTGTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GTGAAATTATTT
Flanking Amino Acid:
LGTCHNFLAASPAILRNAFR
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.2
58.5
43.1
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
75.8
0.58
1.1
72.9
42.2
Minor 5ss
67
0.57
1.9
73.9
42.5
Minor BPS
43.8
-0.3
2
59.9
43.2

Associated Gene:

Gene:
BRCA2
Ensembl Gene ID:
ENSAPLG00000007774
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008073
141955729 - 141991867
36139